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DHPLC Publication List (sorted by categories)

The DHPLC publication list is also available sorted by publication year
small bullet The Method small bullet Single Nucleotide Extension Sequencing and DHPLC
small bullet Sensitivity and Specificity small bullet DNA/RNA Purification
small bullet Mutational Analysis of Candidate Genes small bullet Mass Spectrometry and DHPLC
small bullet BRCA1 & BRCA2 small bullet Quantitation of Gene Expression by DHPLC
small bullet Tuberous Sclerosis small bullet Related Papers
small bullet Mapping and Positional Cloning small bullet Miscellaneous
small bullet Reverse Genetics small bullet Molecular Fingerprinting of Microorganisms
small bullet Human Evolution, Y-Chromosome small bullet DNA Methylation Analysis
   

The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 
Single Nucleotide Extension Sequencing and DHPLC

  1. Hoogendoorn, B., Owen, M.J., Oefner, P.J., Williams, N., Austin, J., O'Donovan, M.C. (1998) Genotyping single nucleotide polymorphisms by primer extension and high performance liquid chromatography. Am. J. Hum. Genet. 63 [Suppl.]:A232.

  2. Hoogendoorn, B., Owen, M.J., Oefner, P.J., Williams, N., Austin, J., O'Donovan, M. (1999) Genotyping single nucleotide polymorphisms by primer extension and high performance liquid chromatography. Hum. Genet. 104(1):89-93.

  3. Yoshihashi, H., Kosaki, R., Suzuki, T., Ohashi, Y., Matsuo, N., Kosaki, K. (2000) Quantification of homologous alleles and methylation analysis by single-nucleotide primer extension and fluorescence-based DHPLC. Am. J. Hum. Genet. 67 [Suppl. 2], 245.

  4. Hoogendoorn, B., Norton, N., Kirov, G., Williams, N., Hamshere, M., Spurlock, G., Austin, J., Stephens, M., Buckland, P., Owen, M. (2000) Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools. Hum Genet. 2000, 107(5):488-93

  5. Giordano, M., Mellai, B., Hoogendoorn, B., Momigliano-Richiardi, P. (2001) Determination of SNP allele frequencies in pooled DNAs by primer extension genotyping and denaturing high-performance liquid chromatography. J Biochem. Biophys. Meth. Jan;47(1-2):101-110

  6. Kosaki, K., Yoshibashi, H., Ohashi, Y., Kosaki, R., Suzuki, T., Matsuo, N. (2001) FLuorescence-based DHPLC for allelic quantification by single-nucleotide primer extension. J Biochem. Biophys. Meth. Jan;47(1-2):111-119

  7. Liang Q, Davis PA, Thompson BH, Simpson JT. (2001) High-performance liquid chromatography multiplex detection of two single nucleotide mutations associated with hereditary hemochromatosis. J Chromatogr B Biomed Sci Appl Apr 15;754(1):265-270

  8. Devaney JM, Pettit EL, Kaler SG, Vallone PM, Butler JM, Marino MA. (2001) Genotyping of two mutations in the HFE gene using single-base extension and high-performance liquid chromatography. Anal Chem Feb 1;73(3):620-624

  9. Rickert A.M., Premstaller A., Gebhardt Ch., Oefner P.J. (2002) Genotyping of SNPs in a Polyploid Genome by Pyrosequencing™. BioTechniques 32:592-603

  10. Shields DC, Fitzgerald AP, O'Neill PA, Muckian C, Kenny D, Moran B, Cannon CP, Byrne CE, Fitzgerald DJ. (2002). The contribution of genetic factors to thrombotic and bleeding outcomes in coronary patients randomised to IIb/IIIa antagonists. Pharmacogenomics J 2, 182-190.

  11. Iwamoto K, Kato T. (2002). Effects of cocaine and reserpine administration on RNA editing of rat 5-HT(2C) receptor estimated by primer extension combined with denaturing high-performance liquid chromatography. Pharmacogenomics J. 2, 335-340.

  12. Wise CA, Paris M, Morar B, Wang W, Kalaydjieva L, Bittles AH. (2003). A standard protocol for single nucleotide primer extension in the human genome using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 17:1195-1202.

  13. Wu G, Hua L, Zhu J, Mo QH, Xu XM.(2003) Rapid, accurate genotyping of beta-thalassaemia mutations using a novel multiplex primer extension/denaturing high-performance liquid chromatography assay. Br J Haematol. 2003 Jul;122(2):311-6.

  14. Yip SP, Pun SF, Leung KH, Lee SY. (2003) Rapid, simultaneous genotyping of five common Southeast Asian beta-thalassemia mutations by multiplex minisequencing and denaturing HPLC. Clin Chem. 2003 Oct;49(10):1656-9.

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