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DHPLC Publication List (sorted by categories)

The DHPLC publication list is also available sorted by publication year

small bullet The Method small bullet Single Nucleotide Extension Sequencing and DHPLC
small bullet Sensitivity and Specificity small bullet DNA/RNA Purification
small bullet Mutational Analysis of Candidate Genes small bullet Mass Spectrometry and DHPLC
small bullet BRCA1 & BRCA2 small bullet Quantitation of Gene Expression by DHPLC
small bullet Tuberous Sclerosis small bullet Related Papers
small bullet Mapping and Positional Cloning small bullet Miscellaneous
small bullet Reverse Genetics small bullet Molecular Fingerprinting of Microorganisms
small bullet Human Evolution, Y-Chromosome small bullet DNA Methylation Analysis
   

The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 
Related Papers
  1. Oefner, P.J., Huber, C.G., Nathakarnkitkool, S. and Bonn, G.K. (1992) Comparative study of capillary zone electrophoresis and high-performance liquid chromatography in the analysis of oligonucleotides and DNA. J.Chromatogr. 625(2):331-340.

  2. Huber, C.G., Oefner, P.J., Preuss, E. and Bonn, G.K. (1993) High-resolution liquid chromatography of DNA fragments on highly cross-linked poly(styrene-divinylbenzene) particles. Nucl. Acids Res. 21:1061-1066.

  3. Huber, C.G., Oefner, P.J. and Bonn, G.K. (1993) High-resolution liquid chromatography of oligonucleotides on nonporous alkylated styrene-divinylbenzene copolymers. Anal. Biochem. 212(2):351-358.

  4. Huber, C.G., Oefner, P.J. and Bonn, G.K. (1993) Rapid analysis of biopolymers on modified nonporous polystyrene-divinylbenzene particles. Chromatographia 37:653-658.

  5. Demidov, V.V., Potaman, V.N. (1993) HPLC photofingerprinting of conformational peculiarities and transitions in oligonucleotide duplexes. Nucleic Acids Res. 21(11):2691-2696.

  6. Hobbs, F.W., Yarem, J.A. (1993) Denaturing HPLC purification of tritylated oligonucleotides using tetraethylammonium hydroxide. BioTechniques 14(4):584-591.

  7. Bonn, G., Huber, C. and Oefner, P. (1994) Verfahren zur Trennung von Nucleinsaeuren. Austrian Patent No. 398 973, Vienna, Austria.

  8. Oefner, P.J., Huber, C.G., Puchhammer-Stockl, E., Umlauft, F., Grünewald, K., Bonn, G.K. and Kunz, C. (1994) High-performance liquid chromatography in the routine analysis of hepatitis C virus cDNA/PCR-products. BioTechniques 16(5):898-908.

  9. Oefner, P.J. and Bonn, G.K. (1994) High-resolution liquid chromatography of nucleic acids. Amer. Lab. 26 (9), 28C - 28J.

  10. Oefner, P.J., Huber, C.G., Umlauft, F., Berti, G.-N., Stimpfl, E. and Bonn, G.K. (1994) High-resolution liquid chromatography of fluorescent dye-labeled nucleic acids. Anal. Biochem. 223(1):39-46.

  11. Huber, C., Oefner, P. and Bonn, G. (1995) Accurate sizing of DNA fragments by ion-pair reversed-phase chromatography. Anal. Chem. 67:578-585.

  12. Huber, C.G., Stimpfl, E., Oefner, P.J., and Bonn, G.K. (1996) A comparison of micropellicular anion-exchange and reversed-phase stationary phases for HPLC analysis of oligonucleotides. LC-GC 14[2]:114-127.

  13. Bonn, G., Huber, C., Oefner, P. (1996) Nucleic Acid Separation on Alkylated Nonporous Polymer Beads. U.S. Patent No. 5,585,236.

  14. Huber, C.G., Berti, N. (1996) Detection of partial denaturation in AT-rich DNA fragments by ion-pair reversed-phase chromatography. Anal. Chem. 68:2959-2965.

  15. Marino, M.A., Devaney, J.M., Smith, J.K., Girard, J.E. (1998) Sequencing using capillary electrophoresis of short tandem repeat alleles separated and purified by high performance liquid chromatography. Electrophoresis 19(1):108-118.

  16. Marino, M.A., Devaney, J.M., Davis, P.A., Smith, J.K., and Girard, J.E. (1998). Spectral measurements of intercalated PCR-amplified short tandem repeat alleles. Anal. Chem. 70, 4514-4519.

  17. Huber, C.G. (1998) Micropellicular stationary phases for high-performance liquid chromatography of double-stranded DNA. J. Chromatogr. A 806(1):3-30

  18. Devaney, J.M., Girard, J.E., Marino, M.A. (2000) DNA microsatellite analysis using ion-pair reversed-phase high-performance liquid chromatography. Anal. Chem. 72(4):858-864.

  19. Hoogendoorn B, Norton N, Kirov G, Williams N, Hamshere ML, Spurlock G, Austin J, Stephens MK, Buckland PR, Owen MJ, O'Donovan MC. (2000) Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools. Hum Genet. Nov;107(5):488-93

  20. Bray, P.J., and Paalman, M.H. (2000). DNA 2000: International Symposium on the state-of-the-art in genetics analysis, June 1-3, 2000, Boston, USA. Hum. Mutat. 16, 364-370.

  21. Butler, J.M., Devaney, J.M., Marino, M.A., and Vallone, P.M. (2001). Quality control of PCR primers used in multiplex STR amplification reactions. Forensic Sci. Int. 119, 87-96.

  22. Shi, M.M. (2001). Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies. Clin. Chem. 47, 164-172.

  23. Baumer A. (2002) Analysis of the methylation status of imprinted genes based on methylation-specific polymerase chain reaction combined with denaturing high-performance liquid chromatography. Methods. Jun;27(2):139-43.

  24. Dickman MJ, Matin MM, Hornby DP. (2002) High-throughput analysis of nucleic acid modification reactions using ion-pair reverse-phase high-performance liquid chromatography. Anal Biochem. 2002 Feb 15;301(2):290-7.

  25. Ingleston SM, Dickman MJ, Grasby JA, Hornby DP, Sharples GJ, Lloyd RG. (2002) Holliday junction binding and processing by the RuvA protein of Mycoplasma pneumoniae. Eur J Biochem. Mar;269(5):1525-1533.

  26. Dickman MJ, Conroy MJ, Grasby JA, Hornby DP. (2002) RNA footprinting analysis using ion pair reverse phase liquid chromatography. RNA. Feb;8(2):247-51.

  27. Perez-Perez FJ, Hanson ND. (2002). Detection of plasmid-mediated AmpC beta-lactamase genes in clinical isolates by using multiplex PCR. Clin. Microbiol. 40, 2153-2162.

  28. Cooksey RC, Morlock GP, Holloway BP, Limor J, Hepburn M. (2002). Temperature-mediated heteroduplex analysis performed by using denaturing high-performance liquid chromatography to identify sequence polymorphisms in Mycobacterium tuberculosis complex organisms. J. Clin. Microbiol. 40, 1610-1616.

  29. Schwarz G, Sift A, Wenzel G, Mohler V. (2003) DHPLC scoring of a SNP between promoter sequences of HMW glutenin x-type alleles at the Glu-D1 locus in wheat. J Agric Food Chem. 2003 Jul 16;51(15):4263-7.

  30. Mabic S, Kano I. (2003). Impact of purified water quality on molecular biology experiments. Clin. Chem. Lab. Med. 41, 486-491.

  31. Zhang Y, Brown G, Whetten R, Loopstra CA, Neale D, Kieliszewski MJ, Sederoff RR. (2003). An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. Plant Mol. Biol. 52, 91-102.

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