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DHPLC Publication List (sorted by categories)

The DHPLC publication list is also available sorted by publication year

small bullet The Method small bullet Single Nucleotide Extension Sequencing and DHPLC
small bullet Sensitivity and Specificity small bullet DNA/RNA Purification
small bullet Mutational Analysis of Candidate Genes small bullet Mass Spectrometry and DHPLC
small bullet BRCA1 & BRCA2 small bullet Quantitation of Gene Expression by DHPLC
small bullet Tuberous Sclerosis small bullet Related Papers
small bullet Mapping and Positional Cloning small bullet Miscellaneous
small bullet Reverse Genetics small bullet Molecular Fingerprinting of Microorganisms
small bullet Human Evolution, Y-Chromosome small bullet DNA Methylation Analysis
   

The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 
Quantitation of Gene Expression by DHPLC
  1. Hayward-Lester, A., Oefner, P.J., Sabatini, S. and Doris, P.A. (1995) Accurate and absolute quantitative measurement of gene expression by single tube RT-PCR and HPLC. Genome Res. 5(5):494-499.

  2. Hayward-Lester, A., Oefner, P.J. and Doris, P.A. (1996) Rapid quantification of gene expression by competitive RT-PCR and ion-pair reversed-phase HPLC. BioTechniques 20(2):250-257.

  3. Hayward-Lester, A., Hewetson, A., Beale, E.G., Oefner, P.J., Doris, P.A., Chilton, B.S. (1996) Cloning, characterization, and steroid-dependent posttranscriptional processing of RUSH-1 alpha and beta, two uteroglobin promoter-binding proteins. Mol. Endocrinol. 10(11):1335-1349.

  4. Hinojos, C.A., Hayward-Lester, A., Sabatini, S., Oefner, P.J., Doris, P.A. (1996) Kidney and nephron calcineurin (CaN) expression in spontaneously hypertensive rats (SHR) by competitive RT-PCR and IP-RP-HPLC. Mol. Biol. Cell. 7 [Suppl.]:469A.

  5. Hayward-Lester, A., Lonis, B., Sabatini, S., Lee, A.M., Oefner, P.J., Doris, P.A. (1996) Analysis of multiple sodium pump genes expressed in nephrons from spontaneously hypertensive rats (SHR) by competitive RT-PCR and IP-RP-HPLC. Mol. Biol. Cell. 7 [Suppl.]:470A.

  6. Umlauft, F., Oefner, P.J., Wong, D.T., Grill, E., Greenberg, H.B. (1996) Rapid quantification of HCV RNA by competitive RT-PCR and ion-pair reversed-phase HPLC. Gastroenterology 110:A1349.

  7. Robinson, C.A., Hayward-Lester, A., Hewetson, A., Oefner, P.J., Doris, P.A., Chilton, B.S. (1997) Quantification of alternatively spliced RUSH mRNA isoforms by QRT-PCR and IP-RP-HPLC analysis: a new approach to measuring regulated splicing efficiency. Gene 198(1-2):1-4.

  8. Hayward-Lester, A., Chilton, B.S., Underhill, P.A., Oefner, P.J., Doris, P.A. (1997) Quantification of specific nucleic acids, regulated RNA processing and genomic polymorphisms using reversed-phase HPLC. In: Gene Quantification (Ed. F. Ferré), Birkhäuser Verlag, pp. 44-77.

  9. Hayward-Lester, A., Oefner, P.J., Doris, P.A. (1997) An update on rapid quantification of gene expression by competitive RT-PCR and ion-pair-reversed-phase HPLC." In: The PCR Technique: Quantitative PCR (Ed. Larrick, J.) Eaton Press, pp. 125-139.

  10. Doris, P.A., Hayward-Lester, A., Hays, J.K. (1997) Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. Comput. Appl. Biosci. 13(6):587-591.

  11. Bodine, P.V.N., Green, J., Harris, H.A., Bhat, R.A., Stein, G.S., Lian, J.B., and B.S. Komm (1997) Functional properties of a conditionally phenotypic, estrogen-responsive, human osteoblast cell line. J. Cell. Biochem. 65(3):368-387.

  12. Hayward, A.L., Oefner, P.J., Sabatini, S., Kainer, D.B., Hinojos, C.A., Doris, P.A. (1998) Modeling and analysis of competitive RT-PCR. Nucleic Acids Res. 26(11):2511-2518.

  13. Doris, P.A., Oefner, P.J., Chilton, B.S., Hayward-Lester, A. (1998) Quantitative analysis of gene expression by ion-pair high-performance liquid chromatography. J. Chromatogr. A 806(1):47-60.

  14. Nguyen, A.T., Hayward-Lester, A., Sabatini, S., Doris, P.A. (1998) Renal Na+, K+-ATPase in SHR: studies of activity and gene expression. Clin. Exp. Hypertens. 20(5-6):641-656.

  15. Hayward-Lester, A., Oefner, P.J., Kainer, D., Hinojos, C.A., Doris, P.A. (1998) Kinetics of competitive RT-PCR. In: PCR Methods Manual (Eds. M. Innis, D. Gelf and J. Sninsky), Academic Press, San Diego, pp. 231-261.

  16. Hayward, A.L., Hinojos, C.A., Nurowska, B., Hewetson, A., Sabatini, S., Oefner, P.J., Doris, P.A. (1999) Altered sodium pump alpha and gamma subunit gene expression in nephron segments from hypertensive rats. J. Hypertens. 17(8):1081-1087.

  17. Tanaka, A., Lindor, K., Gish, R., Batts, K., Shiratori, Y., Omata, M., Nelson, J.L., Ansari, A., Coppel, R., Newsome, M., Gershwin, M.E. (1999) Fetal microchimerism alone does not contribute to the induction of primary biliary cirrhosis. Hepatology 30(4):833-838.

  18. Kainer DB, Doris PA. (2000). Cyclophilin B expression in renal proximal tubules of hypertensive rats. Hypertension 35, 958-964.

  19. Leerkes, M.R., Caballero, O.L., Mackay, A., Torloni, H., O'Hare, M.J., Simpson, A.J.G., de Souza, S.J. (2002). In silico comparison of the transcriptome derived from purified normal breast cells and breast tumor cell lines reveals candidate upregulated genes in breast tumor cells. Genomics 79, 257-265.

  20. Guo M, Rupe MA, Danilevskaya ON, Yang X, Hu Z. (2003) Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. Plant J. 2003 Oct;36(1):30-44.

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