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DHPLC Publication List (sorted by categories)

The DHPLC publication list is also available sorted by publication year

small bullet The Method small bullet Single Nucleotide Extension Sequencing and DHPLC
small bullet Sensitivity and Specificity small bullet DNA/RNA Purification
small bullet Mutational Analysis of Candidate Genes small bullet Mass Spectrometry and DHPLC
small bullet BRCA1 & BRCA2 small bullet Quantitation of Gene Expression by DHPLC
small bullet Tuberous Sclerosis small bullet Related Papers
small bullet Mapping and Positional Cloning small bullet Miscellaneous
small bullet Reverse Genetics small bullet Molecular Fingerprinting of Microorganisms
small bullet Human Evolution, Y-Chromosome small bullet DNA Methylation Analysis
   

The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 
Mapping and Positional Cloning
  1. Giordano, M., Oefner, P.J., Underhill, P.A., Cavalli-Sforza, L.L., Tosi, R., Richiardi, P.M. (1999) Identification by denaturing high-performance liquid chromatography of numerous polymorphisms in a candidate region for multiple sclerosis susceptibility. Genomics 56(3):247-253.

  2. Cho, R.J., Mindrinos, M., Richards, D.R., Sapolsky, R.J., Anderson, M., Drenkard, E., Dewdnay, J., Reuber, L., Stammers, M., Federspiel, N., Theologis, A., Yang, W.-H., Hubbell, E., Lashkari, D., Lemieux, B., Dean, C., Lipshutz, R., Ausubel, F.M., Davis, R.W., Oefner, P.J. (1999) Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nature Genet. 23:203-207.

  3. Schriml, L.M., Peterson, R.J., Gerrard, B., Dean, M. (2000) Use of denaturing HPLC to map human and murine genes and to validate single-nucleotide polymorphisms. BioTechniques 28(4):740-745.

  4. Schriml, L.M., Dean, M. (2000) Identification of 18 mouse ABC genes and characterization of the ABC superfamily in Mus musculus. Genomics 64(1):24-31.

  5. Steinmetz, L.M., Mindrinos, M., Oefner P.J. (2000) Combining genome sequences and new technologies for dissecting the genetics of complex phenotypes. Trends Plant Sci. 5(9):397-401.

  6. Spiegelman JI, Mindrinos MN, Fankhauser C, Richards D, Lutes J, Chory J, Oefner PJ. (2000) Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. Plant Cell. 2000, 12(12):2485-2498

  7. Hoskins RA, Phan AC, Naeemuddin M, Mapa FA, Ruddy DA, Ryan JJ, Young LM, Wells T, Kopczynski C, Ellis MC. (2001) Single Nucleotide Polymorphism Markers for Genetic Mapping in Drosophila melanogaster. Genome Res. 2001 Jun;11(6):1100-13.

  8. Kota R, Wolf M, Michalek W, Graner A. (2001) Application of denaturing high-performance liquid chromatography for mapping of single nucleotide polymorphisms in barley (Hordeum vulgare L.). Genome. Aug;44(4):523-8.

  9. Shimomura K, Low-Zeddies SS, King DP, Steeves TD, Whiteley A, Kushla J, Zemenides PD, Lin A, Vitaterna MH, Churchill GA, Takahashi JS. (2001). Genome-wide epistatic interaction analysis reveals complex genetic determinants of circadian behavior in mice. Genome Res. 11, 959-80.

  10. Johnson, G.C., Esposito, L., Barratt, B.J., Smith, A.N., Heward, J., Di Genova, G., Ueda, H., Cordell, H.J., Eaves, I.A., Dudbridge, F., Twells, R.C., Payne, F., Hughes, W., Nutland, S., Stevens, H., Carr, P., Tuomilehto-Wolf, E., Tuomilehto, J., Gough, S.C., Clayton, D.G., Todd, J.A. (2001). Haplotype tagging for the identification of common disease genes. Nat. Genet. 29, 1-5.

  11. Nairz K, Stocker H, Schindelholz B, Hafen E. (2002). High-resolution SNP mapping by denaturing HPLC. Proc. Natl. Acad. Sci. 99, 10575-10580.

  12. Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL. (2002). Arabidopsis map-based cloning in the post-genome era. Plant Physiol 129:440-450.

  13. D'Alfonso S, Giordano M, Mellai M, Lanceni M, Barizzone N, Marchini M, Scorza R, Danieli MG, Cappelli M, Rovere P, Sabbadini MG, Momigliano-Richiardi P. (2002) Association tests with systemic lupus erythematosus (SLE) of IL10 markers indicate a direct involvement of a CA repeat in the 5' regulatory region. Genes Immun.Dec;3(8):454-63.

  14. Contu D, Morelli L, Zavattari P, Lampis R, Angius E, Frongia P, Murru D, Maioli M, Francalacci P, Todd JA, Cucca F. (2002). Sex-related bias and exclusion mapping of the nonrecombinant portion of chromosome Y in human type 1 diabetes in the isolated founder population of Sardinia. Diabetes 51, 3573-3576.

  15. Brightwell G, Wycherley R, Potts G, Waghorn A. (2002). A high-density SNP map for the FRAX region of the X chromosome. J. Hum. Genet. 47, 567-575.

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