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DHPLC Publication List (sorted by categories)

The DHPLC publication list is also available sorted by publication year
small bullet The Method small bullet Single Nucleotide Extension Sequencing and DHPLC
small bullet Sensitivity and Specificity small bullet DNA/RNA Purification
small bullet Mutational Analysis of Candidate Genes small bullet Mass Spectrometry and DHPLC
small bullet BRCA1 & BRCA2 small bullet Quantitation of Gene Expression by DHPLC
small bullet Tuberous Sclerosis small bullet Related Papers
small bullet Mapping and Positional Cloning small bullet Miscellaneous
small bullet Reverse Genetics small bullet Molecular Fingerprinting of Microorganisms
small bullet Human Evolution, Y-Chromosome small bullet DNA Methylation Analysis
   

The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 
Human Evolution, Y-Chromosome

  1. Underhill, P.A., Jin, L., Oefner, P.J., Cavalli-Sforza, L.L. (1995) Y-chromosomal variation and recent conquests in deciphering human origins. Am. J. Hum. Genet. 57 [Suppl.], A43. (Abstract)

  2. Zemans, R., Jin, L., Underhill, P.J., Oefner, P.J., Cavalli-Sforza, L.L. (1995) Identification and characterization of pre-Columbian human Y chromosome specific allele. Am. J. Hum. Genet. 57 [Suppl.], A174. (Abstract)

  3. Underhill, P.A., Jin, L., Zemans, R., Oefner, P.J., Cavalli-Sforza, L.L. (1996) A pre-Columbian human Y chromosome-specific C to T transition and its implications for human evolution. Proc. Natl. Acad. Sci. USA 93(1):196-200.

  4. Underhill, P.A., Jin, L., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. (1996) Amassing a wealth of Y chromosome polymorphisms for evolutionary studies. Am. J. Hum. Genet. 59 [Suppl.]:A30. (Abstract)

  5. Underhill, P.A., Jin, L., Lin, A., Chan, C., Shen, P., Kauffman, E., Choi, L., Hurlbut, A., Cavalli-Sforza, L.L., Mehdi, S.Q., Jenkins, T., Seielstad, M.T., Wells, R.S., Ibrahim, M., Vollrath, D., Hyman, R., Davis, R., Oefner, P.J. (1997) An African origin of human Y chromosomes. Am. J. Hum. Genet. 61 [Suppl.]:A18.

  6. Underhill, P. A., Jin, L., Lin, A. L., Mehdi, S. Q., Jenkins, T., Vollrath, D., Davis, R., Cavalli-Sforza, L.L., Oefner, P.J. (1997) Detection of numerous Y chromosome biallelic polymorphisms by denaturing high performance liquid chromatography. Genome Res. 7(10):996-1005.

  7. Underhill, P.A., Mehdi, S.Q., Cavalli-Sforza, L.L., Davis, R.W., Oefner, P.J. (1998) Panorama of Y chromosome SNP haplotype diversity in Pakistan. Am. J. Hum. Genet. 63 [Suppl.]:A223.

  8. Cavalli-Sforza, L. (1998). Man and the diversity of his genome. An extraordinary phase in the history of population genetics. Pathol. Biol. 46, 98-102.

  9. Jin, L., Underhill, P.A., Doctor, V., Davis, R.W., Shen, P., Cavalli-Sforza, L.L., and Oefner, P.J. (1999). Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Proc. Natl. Acad. Sci. 96, 3796-3800.

  10. Sun, C., Skaletsky, H., Birren, B., Devon, K., Tang, Z., Silber, S., Oates, R., Page, D.C. (1999) An azoospermic man with a de novo point mutation in the Y-chromosomal gene USP9Y. Nature Genet. 23(4):429-432.

  11. Deka, R., Su, B., Underhill, P., Saha, N., McGarvey, S.T., Chou, J., Oefner, P., Shriver, M.D., Chakraborty, R., Martinson, J. Jin, L. (1999) Polynesian origins: new insights from the Y-chromosome. Am. J. Hum. Genet. 65 [Suppl.]:A83 (Abstract)

  12. Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., et al. (1999) Y chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am. J. Hum. Genet. 65:1718-1724.

  13. Shen, P., Wang, F., Underhill, P.A., Franco, C., Yang, W.H., Roxas, A., Sung, R., Lin, A.A., Hyman, R.W., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L., Oefner, P.J. (2000) Population genetic implications from sequence variation in four Y chromosome genes. Proc. Natl. Acad. Sci. USA 97(13):7354-7359.

  14. Thomson, R., Pritchard, J.K, Shen, P., Oefner, P.J., Feldman, M.W. (2000) Recent common ancestry of human Y chromosomes: Evidence from DNA sequence data.. Proc. Natl. Acad. Sci. USA 97(13):7360-7365.

  15. Su, B., Jin, L., Underhill, P., Martinson, J., Saha, N., McGarvey, S.T., Shriver, M.D., Chu, J., Oefner, P., Chakraborty, R., Deka, R. (2000) Polynesian origins: Insights from the Y chromosome. Proc. Natl. Acad. Sci. USA, 97(15):8225-8228.

  16. Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J.R., Mehdi, S.Q., Seielstad, M.T., Wells, R.S., Piazza, A., Davis, R.W., Feldman, M.W., Cavalli-Sforza, L.L., Oefner, P.J. (2000) Y chromosome sequence variation and the history of human populations. Nat. Genet. 26(3):358-361.

  17. Semino, O., Passarino, G., Oefner, P.J., Lin, A.A., Arbuzova, S., Beckman, L.E., De Bendictis, G., et al. (2000) The genetic legacy of paleolithic Homo sapiens sapiens in extant Europeans: A Y chromosome perspective. Science 290: 1155-1159.

  18. Hammer MF, Redd AJ, Wood ET, Bonner MR, Jarjanazi H, Karafet T, Santachiara-Benerecetti S, Oppenheim A, Jobling MA, Jenkins T, Ostrer H, Bonne-Tamir B. (2000) Jewish and Middle Eastern non-Jewish populations share a common pool of Y-chromosome biallelic haplotypes. Proc Natl Acad Sci U S A, Jun 6;97(12):6769-74.

  19. Ke Y, Su B, Song X, Lu D, Chen L, Li H, Qi C, Marzuki S, Deka R, Underhill P, Xiao C, Shriver M, Lell J, Wallace D, Wells RS, Seielstad M, Oefner P, Zhu D, Jin J, Huang W, Chakraborty R, Chen Z, Jin L. (2001) African origin of modern humans in East Asia: a tale of 12,000 Y chromosomes. Science. May 11;292(5519):1151-3.

  20. Underhill PA, Passarino G, Lin AA, Shen P, Mirazon Lahr M, Foley RA, Oefner PJ, Cavalli-Sforza LL. (2001) The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann Hum Genet. Jan;65(Pt 1):43-62.

  21. Bosch, E., Calafell, F., Comas, D., Oefner, P.J., Underhill, P.A., and Betranpetit, J. (2001). High-resolution analysis of human Y-chromosome variation shows a sharp discontinuity and limited gene flow between northwestern Africa and the Iberian peninsula. Am. J. Hum. Genet. 68, 1019-1029.

  22. Richards, M. and Macaulay, V. (2001). The mitochondrial gene tree comes of age. Am. J. Hum. Genet. 68, 1315-1320.

  23. Underhill, P.A., Passarino, G., Lin, A.A., Marzuki, S., Oefner, P.J., Cavalli-Sforza, L.L., and Chambers, G.K. (2001). Maori origins, Y-chromosome haplotypes and implications for human history in the Pacific. Hum. Mutat. 17, 271-280.

  24. Tang, H., Siegmund, D., Shen, P., Oefner, P., Feldman, M. (2001) Estimation of time to the most recent common ancestor by tree-partition. Am. J. Hum. Genet. 69 [Suppl.], 394

  25. Shen, P., Tang, H., Passarino, P., Do, B., Sung, R., Davis, K., Scharfe, C., Cavalli-Sforza, L.L., Feldman, M.W., Oefner, P.J. (2001) Parallels and contrasts in female and male human evolutionary history. Am. J. Hum. Genet. 69 [Suppl.], 423

  26. Wayne, T.L., Thorstenson, Y.R., Oefner, P.J. (2001) Interspecies comparisons of the ATM gene. Am. J. Hum. Genet. 69 [Suppl.], 542

  27. Passarino G, Cavalleri GL, Lin AA, Cavalli-Sforza LL, Borresen-Dale AL, Underhill PA. (2002) Different genetic components in the Norwegian population revealed by the analysis of mtDNA and Y chromosome polymorphisms. Eur J Hum Gene Sep;10(9):521-9.

  28. Bosch E, Calafell F, Rosser ZH, Norby S, Lynnerup N, Hurles ME, Jobling MA. (2003). High level of male-biased Scandinavian admixture in Greenlandic Inuit shown by Y-chromosomal analysis. Hum. Genet. 112, 353-363.

  29. Francalacci P, Morelli L, Underhill PA, Lillie AS, Passarino G, Useli A, Madeddu R, Paoli G, Tofanelli S, Calo CM, Ghiani ME, Varesi L, Memmi M, Vona G, Lin AA, Oefner P, Cavalli-Sforza LL. (2003). Peopling of three Mediterranean Islands (Corsica, Sardinia, and Sicily) inferred by Y-chromosome biallelic variability. Am J Phys Anthropol 121:270-279.

  30. Bosch E, Calafell F, Rosser ZH, Norby S, Lynnerup N, Hurles ME, Jobling MA. (2003). High level of male-biased Scandinavian admixture in Greenlandic Inuit shown by Y-chromosomal analysis. Hum. Genet. 112, 353-363.

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