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DHPLC Publication List (chronological order)

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The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 

 
1998
  1. Oefner, P.J., Underhill, P.A. (1998) DNA mutation detection using denaturing high-performance liquid chromatography (DHPLC). Current Protocols in Human Genetics. Wiley & Sons, New York, Supplement 19:7.10.1-7.10.12.

  2. Kuklin, A., Munson, K., Gjerde, D., Haefele, R., Taylor, P. (1998) Detection of single-nucleotide polymorphisms with the WAVE(tm) DNA Fragment Analysis System. Genetic Testing 1(3):201-206.

  3. Kuklin, A., Davis, A.P., Haefele, R., Alianell, G., Gjerde, D., and Taylor, P. (1998). New Paradigms in DNA polymorphism detection. Biomed. Products 7, 90-92.

  4. O'Donovan, M.C., Oefner, P.J., Roberts, S., Austin, J., Guy, C., Hoogendoorn, B., Sommer, S., McGuffin, P. (1998). Blind analysis of denaturing high performance liquid chromatography as a tool for mutation detection. Genomics 52(1):44-49.

  5. O'Donovan, M.C., Oefner, P.J., Roberts, S.C., Austin, J., Hoogendoorn, B., Guy, C., Speight, G., Upadhyaya, M., Sommer, S.S., McGuffin, P. (1998) Blind Analysis of denaturing high-performance liquid chromatography as a tool for mutation detection. Am. J. Hum. Genet. 63 [Suppl.]:A238.

  6. Yokomizo, A., Tindall, D.J., Drabkin, H., Gemmill, R., Franklin, W., Yang, P., Sugio, Y., Smith, D.I., Liu, W. (1998) PTEN/MMAC1 mutations identified in small cell, but not in non-small cell lung cancers. Oncogene 17(4):475-479.

  7. Liu, W., Smith, D.I., Rechtzigel, K.J.,Thibodeau, S.N. and James, C.D. (1998) Denaturing high performance liquid chromatography (DHPLC) used in the detection of germline and somatic mutations. Nucl. Acids Res. 26(6):1396-1400.

  8. Mai, M., Yokomizo, A., Qian, C., Yang, P., Tindall, D.J., Smith, D.I., and W. Liu. (1998) Activation of p73 silent allele in lung cancer. Cancer Res. 58(11):2347-2349.

  9. Liu, W.O., Oefner, P.J., Qian, C., Odom, R.S., Francke, U. (1998) Denaturing HPLC-identified novel FBN1 mutations, polymorphisms, and sequence variants in Marfan syndrome and related connective tissue disorders. Genet. Test. 1(4):237-242.

  10. Wagner, T.M.U., Moslinger, R.A., Muhr, D., et al. (1998) BRCA1-related breast cancer in Austrian breast and ovarian cancer families: specific BRCA1 mutations and pathological characteristics. Int. J. Cancer 77(3):354-360.

  11. Wagner, T., Hirtenlehner, K., Shen, P., Moeslinger, R., et al. (1998) High frequency of simple sequence variation in BRCA2: Analysis of 70 breast cancer families and 95 control individuals of world wide populations. Am. J. Hum. Genet. 63 [Suppl.]:A90.

  12. Huang, J.H., Oefner, P.J., Adi, V., Ratnam, K., Ruoss, S.J., Trako, E., Kao, P.N. (1998) Analyses of the NRAMP1 and IFN- g Receptor 1 genes in women with MAI pulmonary disease. Am. J. Respir. Crit. Care Med. 157(2):377-381.

  13. Martin, M.P., Dean, M., Smith, M.W., Winkler, C., Gerrard, B., Michael, N.L., Lee, B., Doms, R.W., Margolick, J., Buchbinder, S., Goedert, J.J., O'Brien, T.R., Hilgartner, M.W., Vlahov, D., O'Brien, S.J., Carrington, M. (1998) Genetic acceleration of AIDS progression by a promoter variant of CCR5. Science 282:1907-1911.

  14. Underhill, P.A., Mehdi, S.Q., Cavalli-Sforza, L.L., Davis, R.W., Oefner, P.J. (1998) Panorama of Y chromosome SNP haplotype diversity in Pakistan. Am. J. Hum. Genet. 63 [Suppl.]:A223.

  15. Cavalli-Sforza, L. (1998). Man and the diversity of his genome. An extraordinary phase in the history of population genetics. Pathol. Biol. 46, 98-102.

  16. Hoogendoorn, B., Owen, M.J., Oefner, P.J., Williams, N., Austin, J., O'Donovan, M.C. (1998) Genotyping single nucleotide polymorphisms by primer extension and high performance liquid chromatography. Am. J. Hum. Genet. 63 [Suppl.]:A232.

  17. Marino, M.A., Devaney, J.M., Smith, J.K., Girard, J.E. (1998) Sequencing using capillary electrophoresis of short tandem repeat alleles separated and purified by high performance liquid chromatography. Electrophoresis 19(1):108-118.

  18. Hayward, A.L., Oefner, P.J., Sabatini, S., Kainer, D.B., Hinojos, C.A., Doris, P.A. (1998) Modeling and analysis of competitive RT-PCR. Nucleic Acids Res. 26(11):2511-2518.

  19. Doris, P.A., Oefner, P.J., Chilton, B.S., Hayward-Lester, A. (1998) Quantitative analysis of gene expression by ion-pair high-performance liquid chromatography. J. Chromatogr. A 806(1):47-60.

  20. Nguyen, A.T., Hayward-Lester, A., Sabatini, S., Doris, P.A. (1998) Renal Na+, K+-ATPase in SHR: studies of activity and gene expression. Clin. Exp. Hypertens. 20(5-6):641-656.

  21. Hayward-Lester, A., Oefner, P.J., Kainer, D., Hinojos, C.A., Doris, P.A. (1998) Kinetics of competitive RT-PCR. In: PCR Methods Manual (Eds. M. Innis, D. Gelf and J. Sninsky), Academic Press, San Diego, pp. 231-261.

  22. Marino, M.A., Devaney, J.M., Smith, J.K., Girard, J.E. (1998) Sequencing using capillary electrophoresis of short tandem repeat alleles separated and purified by high performance liquid chromatography. Electrophoresis 19(1):108-118.

  23. Marino, M.A., Devaney, J.M., Davis, P.A., Smith, J.K., and Girard, J.E. (1998). Spectral measurements of intercalated PCR-amplified short tandem repeat alleles. Anal. Chem. 70, 4514-4519.

  24. Huber, C.G. (1998) Micropellicular stationary phases for high-performance liquid chromatography of double-stranded DNA. J. Chromatogr. A 806(1):3-30

  25. Liu, W. Yokomizo, A. Cheong-Yong, K. Frederick, L. Qian, C. Bostwick, D. Jenkins, R. Thibodeau, S. Smith, D. James, D. (1998) Denaturing HPLC Identifies PTEN Mutations in Gioblastomas but Not in Prostate Cancers. Approaches to the Prevention, Diagnosis, and Therapy of Cancer. The 4th Joint Conference of the AACR/JCR. Maui, Hawaii. C-3.

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