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DHPLC Publication List (chronological order)

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The references below are hyper-linked to their abstract via PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

Please, forward new citations for inclusion in this list to oefner#genome.stanford.edu

 

 
1996
  1. Ophoff, R.A., Terwindt, G.M., Vergouwe, M.N., et al. (1996) Familial hemiplegic migraine and episodic ataxia type-2 are caused by mutations in the Ca2+ channel gene CACNL1A4. Cell 87(3):543-552.

  2. Underhill, P.A., Jin, L., Zemans, R., Oefner, P.J., Cavalli-Sforza, L.L. (1996) A pre-Columbian human Y chromosome-specific C to T transition and its implications for human evolution. Proc. Natl. Acad. Sci. USA 93(1):196-200.

  3. Underhill, P.A., Jin, L., Cavalli-Sforza, L.L., Davis, R., Oefner, P.J. (1996) Amassing a wealth of Y chromosome polymorphisms for evolutionary studies. Am. J. Hum. Genet. 59 [Suppl.]:A30. (Abstract)

  4. Hayward-Lester, A., Oefner, P.J. and Doris, P.A. (1996) Rapid quantification of gene expression by competitive RT-PCR and ion-pair reversed-phase HPLC. BioTechniques 20(2):250-257.

  5. Hayward-Lester, A., Hewetson, A., Beale, E.G., Oefner, P.J., Doris, P.A., Chilton, B.S. (1996) Cloning, characterization, and steroid-dependent posttranscriptional processing of RUSH-1 alpha and beta, two uteroglobin promoter-binding proteins. Mol. Endocrinol. 10(11):1335-1349.

  6. Hinojos, C.A., Hayward-Lester, A., Sabatini, S., Oefner, P.J., Doris, P.A. (1996) Kidney and nephron calcineurin (CaN) expression in spontaneously hypertensive rats (SHR) by competitive RT-PCR and IP-RP-HPLC. Mol. Biol. Cell. 7 [Suppl.]:469A.

  7. Hayward-Lester, A., Lonis, B., Sabatini, S., Lee, A.M., Oefner, P.J., Doris, P.A. (1996) Analysis of multiple sodium pump genes expressed in nephrons from spontaneously hypertensive rats (SHR) by competitive RT-PCR and IP-RP-HPLC. Mol. Biol. Cell. 7 [Suppl.]:470A.

  8. Umlauft, F., Oefner, P.J., Wong, D.T., Grill, E., Greenberg, H.B. (1996) Rapid quantification of HCV RNA by competitive RT-PCR and ion-pair reversed-phase HPLC. Gastroenterology 110:A1349.

  9. Huber, C.G., Stimpfl, E., Oefner, P.J., and Bonn, G.K. (1996) A comparison of micropellicular anion-exchange and reversed-phase stationary phases for HPLC analysis of oligonucleotides. LC-GC 14[2]:114-127.

  10. Bonn, G., Huber, C., Oefner, P. (1996) Nucleic Acid Separation on Alkylated Nonporous Polymer Beads. U.S. Patent No. 5,585,236.

  11. Huber, C.G., Berti, N. (1996) Detection of partial denaturation in AT-rich DNA fragments by ion-pair reversed-phase chromatography. Anal. Chem. 68:2959-2965.

1997
  1. Kazakevich,Y. and McNair, H.M. (1997) online Textbook on HPLC

  2. Cotton, R.G.H. (1997). Slowly but surely towards better scanning for mutations. Trends Genet. 13, 43-46.

  3. Wagner, T., Muhr, D., Hirtenlehner, K., Möslinger, R., Underhill, P., Scheiner, O., Kubista, E., Oefner, P.J. (1997) Founding BRCA1 and 2 mutations in Austrian HBOC families and individuals of the 5 continents. Am. J. Hum. Genet. 61 [Suppl.]:A86. (Abstract)

  4. Liu, W., Oefner, P., Qian, C., Odom, R., Francke, U. (1997) Denaturing HPLC identified novel FBN1 mutations, polymorphisms and sequence variants in Marfan syndrome patients. Am. J. Hum. Genet. 61 [Suppl.]:A223. (Abstract)

  5. Liu, W., James, C.D., Frederick, L., Aderete, B.E., Jenkins, R.B. (1997) PTEN/MMAC1 mutations and EGFR amplification in glioblastomas. Cancer Res. 57(23):5254-5257.

  6. Ophoff, R.A., Terwindt, G.M., Vergouwe, M.N., Frants, R.R., Ferrari, M.D. (1997) Involvement of a Ca2+ channel gene in familial hemiplegic migraine and migraine with and without aura. Headache 37(8):479-485

  7. Underhill, P.A., Jin, L., Lin, A., Chan, C., Shen, P., Kauffman, E., Choi, L., Hurlbut, A., Cavalli-Sforza, L.L., Mehdi, S.Q., Jenkins, T., Seielstad, M.T., Wells, R.S., Ibrahim, M., Vollrath, D., Hyman, R., Davis, R., Oefner, P.J. (1997) An African origin of human Y chromosomes. Am. J. Hum. Genet. 61 [Suppl.]:A18.

  8. Underhill, P. A., Jin, L., Lin, A. L., Mehdi, S. Q., Jenkins, T., Vollrath, D., Davis, R., Cavalli-Sforza, L.L., Oefner, P.J. (1997) Detection of numerous Y chromosome biallelic polymorphisms by denaturing high performance liquid chromatography. Genome Res. 7(10):996-1005.

  9. Robinson, C.A., Hayward-Lester, A., Hewetson, A., Oefner, P.J., Doris, P.A., Chilton, B.S. (1997) Quantification of alternatively spliced RUSH mRNA isoforms by QRT-PCR and IP-RP-HPLC analysis: a new approach to measuring regulated splicing efficiency. Gene 198(1-2):1-4.

  10. Hayward-Lester, A., Chilton, B.S., Underhill, P.A., Oefner, P.J., Doris, P.A. (1997) Quantification of specific nucleic acids, regulated RNA processing and genomic polymorphisms using reversed-phase HPLC. In: Gene Quantification (Ed. F. Ferré), Birkhäuser Verlag, pp. 44-77.

  11. Hayward-Lester, A., Oefner, P.J., Doris, P.A. (1997) An update on rapid quantification of gene expression by competitive RT-PCR and ion-pair-reversed-phase HPLC." In: The PCR Technique: Quantitative PCR (Ed. Larrick, J.) Eaton Press, pp. 125-139.

  12. Doris, P.A., Hayward-Lester, A., Hays, J.K. (1997) Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. Comput. Appl. Biosci. 13(6):587-591.

  13. Bodine, P.V.N., Green, J., Harris, H.A., Bhat, R.A., Stein, G.S., Lian, J.B., and B.S. Komm (1997) Functional properties of a conditionally phenotypic, estrogen-responsive, human osteoblast cell line. J. Cell. Biochem. 65(3):368-387.

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